Unix Technical Forum

SEO

vBulletin Search Engine Optimization


Go Back   Unix Technical Forum > Unix Operating Systems > Linux Operating System

Register FAQ Members List Calendar Search Today's Posts Mark Forums Read
  #1 (permalink)  
Old 01-17-2008, 05:49 PM
matt hegarty
 
Posts: n/a
Default partition 1 does not end on cylinder boundary

Hello

I wonder if someone could help me out with Linux installation. I've
done a few installs before with Mandrake, but my latest has given me
some problems (I'm a relative newbie).

In a nutshell, it appears I have screwed up my partition table, and I
wonder if I can fix it without blatting the disk and doing a complete
re-install.

In summary:

- Trying to dual-boot Win 2000 and Linux
- Used Partition magic to set-up a 50MB boot partition at the start of
the disk, then windows partition, then linux
- Successfully installed Mandrake 9.2
- Tampering with grub prevented a proper boot into Mandrake
- After much faffing, decided to reinstall.
- Subsequent Mandrake reinstall failed (though win 2000 still boots
fine)

So now Partition Magic hangs before starting, Red Hat Fedora install
won't complete (gave up on Mandrake). But Mandrake install allows you
to get fdisk started, or use the Mandrake repartitioning tool. This I
did and have deleted my Linux partitions, ready for new install.
Looks like fdisk is my best hope from here, but I'm not sure what to
do.

(see below for fdisk output)

So, can I salvage this situation and install Linux without having to
clear the Windows partition?

Matt

==========

$ fdisk /dev/hda1
(verify output)
partition 1 does not end on cylinder boundary
partition 2 does not end on cylinder boundary
warning partition 1 overlaps partition 2
partition 3 does not end on cylinder boundary
total allocated sectors <some huge number> is greater than the maximum
<some smaller number>


$ fdisk /dev/hda
disk /dev/hda: 255 heads, 63 sectors, 3736 cylinders

Nr Af Hd Sec Cyl Hd Sec Cyl Start Size Id
1 80 1 1 7 254 63 1023 112518 30587697 07
2 00 0 0 0 0 0 0 0 0 0
3 00 0 0 0 0 0 0 0 0 0
4 00 0 0 0 0 0 0 0 0 0
Digg this Post!Add Post to del.icio.usBookmark Post in TechnoratiFurl this Post!
Reply With Quote
  #2 (permalink)  
Old 01-17-2008, 05:49 PM
Michael C.
 
Posts: n/a
Default Re: partition 1 does not end on cylinder boundary

On 31 Jan 2004 09:27:39 -0800,
matt hegarty <mash101@talk21.com> wrote:

> So, can I salvage this situation and install Linux without having to
> clear the Windows partition?


My guess is that Windows is fine.

> $ fdisk /dev/hda1


/dev/hda1 is not a disk, it's a partition, and it drove me nuts the
first 2 times I did it. It will likely look like your partition table
is Swiss cheese.

> $ fdisk /dev/hda
> disk /dev/hda: 255 heads, 63 sectors, 3736 cylinders
>
> Nr Af Hd Sec Cyl Hd Sec Cyl Start Size Id
> 1 80 1 1 7 254 63 1023 112518 30587697 07
> 2 00 0 0 0 0 0 0 0 0 0
> 3 00 0 0 0 0 0 0 0 0 0
> 4 00 0 0 0 0 0 0 0 0 0


I'm not great at reading partition tables, but it looks like you have 1
NTFS partition that doesn't start at the beginning of the disk. I
assume PM rewrites the partition table when it hides partitions (I don't
have it.) If my assumption is correct, you might want to make sure PM
is showing all partitions, or just create the linux partitions and let
the distro install Grub/Lilo to the MBR which I'd assume would bypass PM
when booting.

I'm assuming that PM/Boot Magic(?) is out of sync with the partition
table on /dev/hda. Some think hiding partitions is a good idea, but to
my knowledge it usually only complicates things.

HTH,

If someone could point me to a "good" primer on how PM works I'd
appreciate it.

Michael C.
--
mcsuper5@usol.com http://mcsuper5.freeshell.org/
Registered Linux User #303915 http://counter.li.org/


Digg this Post!Add Post to del.icio.usBookmark Post in TechnoratiFurl this Post!
Reply With Quote
  #3 (permalink)  
Old 01-17-2008, 05:49 PM
John Reiser
 
Posts: n/a
Default Re: partition 1 does not end on cylinder boundary

> $ fdisk /dev/hda
> disk /dev/hda: 255 heads, 63 sectors, 3736 cylinders
>
> Nr Af Hd Sec Cyl Hd Sec Cyl Start Size Id
> 1 80 1 1 7 254 63 1023 112518 30587697 07
> 2 00 0 0 0 0 0 0 0 0 0
> 3 00 0 0 0 0 0 0 0 0 0
> 4 00 0 0 0 0 0 0 0 0 0


Those numbers are unusual and inconsistent.

DOS partitions usually start and end on a cylinder boundary,
except that a primary partition may start at C/H/S of 0/1/1
(which is the second track) because the first sector has
the MBR (Master Boot Record) and the rest of the first track
is reserved (for GRUB [or Cedilla :-)].) Primary partition Nr 1
above begins at C/H/S 7/1/1 which is one track into a cylinder.

A Size of (30587697 + 63) corresponds to 1904 cylinders
[1904 == (30587760 / (255 * 63))] yet the table says that
primary partition Nr 1 ends after cylinder 1023. Ordinarily
a program such as Partition Magic would correct this by relying
on the LBA info (30587697 sectors starting at 112518), but
perhaps PM objects to not starting on a cylinder boundary.

Let's try to figure the layout of the beginning of the drive
when it had a /boot partition (that was later deleted.)
Cylinders are numbered from 0 thru 3735, Heads [tracks] are numbered
from 0 thru 254, and Sectors within a track are numbered from 1 thru 63.
LBA (Logical Block [sector] Address) begins at 0.

--lowest--- ---highest-- ---LBA--- --sectors-
Nr Af Hd Sec Cyl Hd Sec Cyl Start Size Id
0 1 0 0 1 0 0 1 MBR (Master Boot Record)
0 2 0 0 63 0 1 62 rest of 1st track; reserved
1 00 1 1 0 254 63 6 63 112392 83 ext2/ext3 54.9MB /boot
0 1 7 0 63 7 112455 63 0 unused track [partitioning mistake]
2 80 1 1 7 254 63 1910 112518 30587697 07 NTFS 14.9GB Windows [not on Cyl boundary]
0 1 1911 254 63 3735 30700215 29318625 0 14.3GB unused rest of disk

So the NTFS partition does not start on a cylinder boundary, but instead
starts one whole track later. This is unusual; many softwares expect
partitions to start and end on cylinder boundaries (except for the partition
that is adjacent to the very first track which contains the MBR and 62
sectors of "reserved" space.)

Evaluate the following strategy to see how well it might meet your needs:
Backup the NTFS data, run fdisk, create a new empty DOS partition table,
re-create the /boot and NTFS partitions [in order] by entering _exactly_
the right numbers to describe where they were [are], write out the partition
table, exit, reboot. Re-run fdisk, print the partition table, check it.
Boot a Linux rescue disk, run fsck on both partitions.

[If you want Partition Magic to work, my guess is that you'll have to
align the NTFS partition to a cylinder boundary.]

--

Digg this Post!Add Post to del.icio.usBookmark Post in TechnoratiFurl this Post!
Reply With Quote
  #4 (permalink)  
Old 01-17-2008, 05:50 PM
matt hegarty
 
Posts: n/a
Default Re: partition 1 does not end on cylinder boundary

John Reiser <jreiser@BitWagon.com> wrote in message:

Many thanks for your replies chaps.

Given that I'm quite inexperienced, I think my best option is to try
and get Partition Magic working. I suppose that by following John's
advice this might be possible, so I have a couple of questions from
here.

> re-create the /boot and NTFS partitions [in order] by entering _exactly_
> the right numbers to describe where they were [are],


Sorry but I don't understand what is meant here. Where do I find the
numbers to describe the correct locations for the partitions?

> write out the partition table, exit, reboot. Re-run fdisk,
> print the partition table, check it.
> Boot a Linux rescue disk, run fsck on both partitions.


So presumably if this works OK, my partition table will be restored to
some semblance of normality, meaning I can recover the situation from
there by running Partition Magic? Or if not, what is the goal of
performing these operations?

> [If you want Partition Magic to work, my guess is that you'll have to
> align the NTFS partition to a cylinder boundary.]


Please can you clarify this for me. How do I determine the cylinder
boundary?

cheers
Matt
Digg this Post!Add Post to del.icio.usBookmark Post in TechnoratiFurl this Post!
Reply With Quote
  #5 (permalink)  
Old 01-17-2008, 05:50 PM
JW
 
Posts: n/a
Default Re: partition 1 does not end on cylinder boundary

One of the best resources on partitions is
http://www.partitionsupport.com/partitionnotes.htm

Under Utilities you will see the application 'findpart' for download; and
also partition editing software. Findpart will give you an excellent
detailed view of all your existing partitions.

Similarly, Powerquests Partinfo does a somewhat similar job. This should be
on your PM CD. I believe it is packaged with both PM, and also DriveImage.

Of interest, when I installed RH9 on my XP system, using PM, I had left
about 10Gb unallocated at the front of my second drive specifically for
Linux. I then let Disk Druid partition that unallocated space during the
Linux installation. Much later DriveImage was telling me that all my Fat32
and NTFS partititions over the 1023 cyl boundary were deemed to have #116
errors, ie CHS address not same as LBA. Fortunately both XP and Linux still
worked. At the time I let DI correct the errors. Later I discovered
findpart, and was able to check my partitions and I am reasonably confident
all is fine.
Subsequently I discovered from these and other newsgroups that partition
managers provided with Linux distributions often screw things up as far as
PM and DI is concerned, but sometimes real, sometimes not.



Digg this Post!Add Post to del.icio.usBookmark Post in TechnoratiFurl this Post!
Reply With Quote
  #6 (permalink)  
Old 01-17-2008, 05:51 PM
John Reiser
 
Posts: n/a
Default Re: partition 1 does not end on cylinder boundary

matt hegarty wrote:
> John Reiser <jreiser@BitWagon.com> wrote in message:
>
> Many thanks for your replies chaps.
>
> Given that I'm quite inexperienced, I think my best option is to try
> and get Partition Magic working. I suppose that by following John's
> advice this might be possible, so I have a couple of questions from
> here.


Do you have a complete, working backup of the NTFS data? Did you test
the restore process and all the media? Back it up again. I mean it.
It will be the best 21 CD-R (or 3 DVD-R) [and few hours] you ever spent.

>>re-create the /boot and NTFS partitions [in order] by entering _exactly_
>>the right numbers to describe where they were [are],

>
>
> Sorry but I don't understand what is meant here. Where do I find the
> numbers to describe the correct locations for the partitions?
>


_IF_ this table [from my previous message] is correct:
=====
disk /dev/hda: 255 heads, 63 sectors, 3736 cylinders
--lowest--- ---highest-- ---LBA--- --sectors-
Nr Af Hd Sec Cyl Hd Sec Cyl Start Size Id
0 1 0 0 1 0 0 1 MBR (Master Boot Record)
0 2 0 0 63 0 1 62 rest of 1st track; reserved
1 00 1 1 0 254 63 6 63 112392 83 ext2/ext3 54.9MB /boot
0 1 7 0 63 7 112455 63 0 unused track [partitioning mistake]
2 80 1 1 7 254 63 1910 112518 30587697 07 NTFS 14.9GB Windows [not on Cyl boundary]
0 1 1911 254 63 3735 30700215 29318625 0 14.3GB unused rest of disk
=====
then the first partition [/dev/hda1, /boot] is from C/H/S 0/1/1 [LBA 63]
through C/H/S 6/254/63 [LBA 112454], and the second partition [/dev/hda2, NTFS]
is from C/H/S 7/1/1 [LBA 112518] through C/H/S 1910/254/63 [LBA 30700214].
The ending points are just _before_ C/H/S 7/0/1 [LBA 112455] and
1911/0/1 [LBA 30700215], respectively.

>>write out the partition table, exit, reboot. Re-run fdisk,
>>print the partition table, check it.
>>Boot a Linux rescue disk, run fsck on both partitions.

>
>
> So presumably if this works OK, my partition table will be restored to
> some semblance of normality, meaning I can recover the situation from
> there by running Partition Magic? Or if not, what is the goal of
> performing these operations?
>

I'm guessing that Partition Magic will still complain because the NTFS
partition does not start on a cylinder boundary. However, the goal of
doing these operations is to see if the filesystem consistency checkers
available under "linux rescue" can verify the existence of good on-disk
structure [filesystems] when given a partition table which describes
where we think the partitions actually live. If the filesystems check
OK, then we proceed. If the filesystems do not check OK, then either
the filesystem data has been destroyed, or the presumed partition table
is incorrect. If a different [better] partition table cannot be
reconstructed, then the only choice is to go back to the very beginning,
start with an empty partition table, create cylinder-aligned partitions,
and restore the NTFS filesystem from the backups [that's why backups
are so important!!]

>
>>[If you want Partition Magic to work, my guess is that you'll have to
>>align the NTFS partition to a cylinder boundary.]


Suppose that the partition table above describes filesystems that check OK.
Then change the partition table so that for the NTFS partition, fdisk says
2 80 0 1 7 254 63 1910 112455 30587760 07 NTFS
which is one track (63 sectors larger) at the beginning: the one track
of free space before the old NTFS partition has been concatenated onto
the front of the NTFS. Boot "linux rescue" then slide the old NTFS partition
data to the beginning of the new on-disk partition using
dd if=/dev/hda2 bs=63b skip=1 of=/dev/hda2
The "bs=63b" means use a blocksize of 63 disk blocks [sectors]; 'b' means
512-byte "blocks", and 63 is the number of sectors per track. See "man dd".
This will take about 50 minutes to transfer 14.9GB in + 14.9GB out at 10MB/s,
plus _another_ 50 minutes if it misses revolutions by not being fast enough.
[Sometimes the transfer rate is not so large, so don't give up too soon.
If you quit too soon, then the NTFS on disk will be destroyed.]
The resulting NTFS partition will be cylinder-aligned at both the beginning
and the end, and will have the same [correct] contents as the old NTFS
partition in the first (30587760 - 63) sectors, and will have garbage in
the last 63 sectors. Run NFTS fsck (or scandisk under Windows) to clean
up the tail end of the partition. The expected diagnosis is something like
"63 missing sectors" and the expected action is "63 missing sectors added
to the free list."

>
> Please can you clarify this for me. How do I determine the cylinder
> boundary?
>

A cylinder boundary is C/H/S of any/0/1, which is equivalent to an LBA
that is divisible by (63 * 255) which is 16065.


[Obviously, you are engaging in risky business here. If your electrical
power fails, if your machine overheats because you are running it with
reduced cooling because you have the covers off, if you forgot to tell
us everything, or left out something important, then we cannot help you.
Backup your data first!]

--



Digg this Post!Add Post to del.icio.usBookmark Post in TechnoratiFurl this Post!
Reply With Quote
Reply


Thread Tools
Display Modes

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

vB code is On
Smilies are On
[IMG] code is On
HTML code is Off
Trackbacks are On
Pingbacks are On
Refbacks are On
Forum Jump


All times are GMT. The time now is 06:45 AM.


Powered by vBulletin® Version 3.6.5
Copyright ©2000 - 2008, Jelsoft Enterprises Ltd.
SEO by vBSEO 3.2.0
UnixAdminTalk.com

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792